PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 496690
Common NameARALYDRAFT_496690
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ERF
Protein Properties Length: 393aa    MW: 42987.9 Da    PI: 7.3443
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
496690genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.78e-20185234255
     AP2   2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
             +y+GVr+++ +g+W+AeIrd +     + +r++lg+f+ ae Aa+a+++a+++++g
  496690 185 RYRGVRQRP-WGKWAAEIRDpF-----KaARVWLGTFDNAESAARAYDEAALRFRG 234
             7********.**********66.....56*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103225.106185242IPR001471AP2/ERF domain
SMARTSM003808.4E-36185248IPR001471AP2/ERF domain
SuperFamilySSF541715.36E-22185243IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.108.5E-32185243IPR001471AP2/ERF domain
PfamPF008473.0E-13185234IPR001471AP2/ERF domain
PRINTSPR003675.2E-11186197IPR001471AP2/ERF domain
CDDcd000182.86E-26193244No hitNo description
PRINTSPR003675.2E-11208224IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006970Biological Processresponse to osmotic stress
GO:0009749Biological Processresponse to glucose
GO:0009788Biological Processnegative regulation of abscisic acid-activated signaling pathway
GO:0050832Biological Processdefense response to fungus
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MCVLKVANQE DNVGKKAEST RDDDHRTLSE IDQWLYFYAA EDDHLRHNFA TQPPPPSSSS  60
SSSLMSGFNR EMEMSAIVSA LTHVVAGNVP QHQQGGGEGS GEGTSNSSSS SGQKRRRDVE  120
EGGGKAVKAA NTLTVDQYFS GGSSTSKVRE ASSNMSGPGP TYEYTTTATA NSETSSFSGD  180
QPRRRYRGVR QRPWGKWAAE IRDPFKAARV WLGTFDNAES AARAYDEAAL RFRGNKAKLN  240
FPENVKLVRP ASTEAQPVPQ TAAQRPTQLR NSGSTTTLLP ILPASNQTVH SQPLMQSYNL  300
SYSEMARQQQ QFQQYHQQSM DLYDQMSFPL RFGHTGDSMM QSTSSSSSHS RPLFSPAAVQ  360
PPPESASETG YLQDIQWPSD KTSNNYNNSP SS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-22184245163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00584DAPTransfer from AT5G64750Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1400920.0AY140092.1 Arabidopsis thaliana putative protein (At5g64750) mRNA, complete cds.
GenBankBT0084800.0BT008480.1 Arabidopsis thaliana At5g64750 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002864920.10.0hypothetical protein ARALYDRAFT_496690
SwissprotQ9FGF80.0ABR1_ARATH; Ethylene-responsive transcription factor ABR1
TrEMBLD7MSJ30.0D7MSJ3_ARALL; Putative uncharacterized protein
STRINGfgenesh2_kg.8__2506__AT5G64750.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM91182137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64750.10.0ERF family protein